From my experience, breeding at an early age does tend to slow their growth down, however, this first batch may well vanish in the community tank, so won't be much of a problem.
I'd give them a few more months of growing time in the community tank before moving them to a breeding tank of their own.
Methylene blue is only used if the parents don't clean their eggs properly, and you're having problems with fungus developing. It's often used by breeders who take the eggs from the parents (as in angel fish) to hatch them in a separate tank. Angel parents are notorious egg eaters and the eggs can be hatched and the fry raised quite successfully on their own. Unlike discus, angel fry don't feed off the slime coat on their parents' body.
It can prevent discus parents developing a proper slime coating to feed their fry, so if you are going to use it, then only use it on the day the eggs are laid, and add carbon to the filter after 2 days to remove all the meth blue, and give the parents a chance to develop a slime coat.
Personally I don't use it on discus. I find that if you lower the pH slightly, to around 6, fungus isn't a problem.